PhD thesis:

The Immunoepidemiological and Evolutionary Dynamics of HIV-1 in the Swiss HIV Cohort Study

Publications:

Nguyen H, Hampel B, Garcia Nuñez D, Battegay M, Hachfeld A, Bernasconi E, Calmy A, Cavassini M, Vernazza P, Fellay J, Rudolph H, Huber M, Leuzinger K, Perreau M, Scherrer A,  Ramette AN, Yerly S, Günthard HF, Kouyos RD, Kusejko K,  the Swiss HIV Cohort Study (2021).

Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group (https://doi.org/10.1093/cid/ciab628)

Clinical Infectious Diseases, July 2021

Nguyen H, Thorball CW, Fellay J, Böni J, Yerly S, Perreau M, Hirsch HH, Kusejko K, Thurnheer MC, Battegay M, Cavassini M, Kahlert CR, Bernasconi E, Günthard HF, Kouyos RD, The Swiss HIV Cohort Study (2021).

Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link (https://doi.org/10.7554/eLife.67388)

eLife, June 2021

Bachmann N, Kusejko K, Nguyen H, Chaudron SE, Kadelka C, Turk T, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Ramette A, Vernazza P, Bernasconi E, Cavassini M, Günthard HF, Kouyos RD (2020).

Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of Human Immunodeficiency Virus Transmission in Men Who Have Sex With Men (https://doi.org/10.1093/cid/ciaa411)

Clinical Infectious Diseases, April 2020

Olearo F, Nguyen H, Bonnet F, Yerly S, Wandeler G, Stoeckle M, Cavassini M, Scherrer A, Costagiola D, Schmid P, Günthard HF, Bernasconi E, Boeni J, D’arminio Monforte A, Zazzi M, Rossetti B, Neau D, Bellecave P, Rijnders B, Reiss P, Wit F, Kouyos R, Calmy A (2019).

Impact of the M184V/I Mutation on the Efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in Human Immunodeficiency Virus Treatment-Experienced Patients (https://doi.org/10.1093/ofid/ofz330)

Open Forum Infectious Diseases, October 2019

Nguyen H, Thorball CW, Fellay J, Böni J, Yerly S, Perreau M, Klimkait T, Kusejko K, Bachmann N, Chaudron S, Paioni P, Thurnheer MC, Battegay M, Cavassini M,  Vernazza P, Bernasconi E, Günthard HF, Kouyos R (2019).

HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected (https://doi.org/10.1097/QAI.0000000000002077)

Journal of Acquired Immune Deficiency Syndromes, August 2019

Kusejko K, Bachmann N, Chaudron SE, Nguyen H, Braun DL, Hampel B, Battegay M, Bernasconi E, Calmy A, Cavassini M, Hoffmann M, Böni J, Yerly S, Klimkait T, Perreau M, Rauch A, Günthard HF, Kouyos RD, Swiss HIV Cohort Study (2019).

A Systematic Phylogenetic Approach to Study the Interaction of HIV-1 With Coinfections, Noncommunicable Diseases, and Opportunistic Diseases (https://doi.org/10.1093/infdis/jiz093 )

The Journal of Infectious Diseases, July 2019